#NEXUS
BEGIN DATA;
dimensions ntax=22 nchar=1050;
format missing=?
symbols="ABCDEFGHIKLMNPQRSTUVWXYZ"
interleave datatype=DNA gap= -;

matrix
Leptomonas.lactosovorans.parti  ATCAACGGCTTTGGCCGCATCGGCCGCATGGTCTTCCAGGCCATGTGCGA
Herpetomonas.pessoai            ATCAACGGTTTCGGCCGCATTGGCCGCATGGTCTTCCAGGCCATGTGCGA
Herpetomonas.muscarum           ATCAACGGTTTCGGCCGCATCGGCCGCATGGTCTTCCAGGCCATGTGCGA
Leptomonas.podlipaevi.5         ATCAACGGTTTCGGCCGCATTGGTCGCATGGTGTTCCAGGCGATGTGCGA
Leptomonas.seymouri             ATCAACGGCTTCGGTCGCATTGGCCGCATGGTGTTCCAGTCGATGTGCGA
Leptomonas.pyrrhocoris          ATCAACGGCTTCGGCCGCATCGGCCGCATGGTGTTCCAGTCGATGTGCGA
Leptomonas.peterhoffi           ATCAACGGCTTCGGCCGCATCGGCCGCATGGTGTTCCAGTCTATTTGCAA
Wallaceina.brevicula            ATCAACGGCTTCGGCCGCATCGGCCGCATGGTGTTCCAGTCTATTTGCAA
Blastocrithidia.gerricola       ATCAACGGCTTCGGCCGCATCGGCCGCATGGTGTTCCAGTCCATGTGCGA
Leptomonas.sp.Cfm               ATCAACGGCTTCGGCCGCATCGGCCGCATGGTGTTCCAGTCCATGTGCGA
Crithidia.fasciculata           ATCAACGGCTTTGGCCGCATCGGCCGCATGGTGTTCCAGTCCATGTGCGA
Leishmania.mexicana             ATCAACGGCTTCGGCCGCATCGGTCGCATGGTATTCCAGGCCATCTGTGA
Leishmania.tarentolae           ATCAACGGCTTCGGCCGCATCGGTCGCATGGTATTCCAGGCCATCTGTGA
Leishmania.major.partial        --------------------------------------------------
Leptomonas.costaricensis        ATCAACGGCTTCGGCCGCATTGGCCGCATGGTGTTCCAGTCGATCTGCGA
Phytomonas.sp                   ATTAACGGCTTCGGTCGTATTGGCCGCAATGTCTTCCAGGCGATCTGCGA
T.brucei                        ATCAATGGTTTCGGCCGTATTGGTCGCATGGTGTTCCAGGCACTGTGCGA
T.vivax.partial                 --------------------------------------------------
T.cruzi                         ATCAACGGCTTTGGCCGCATCGGACGCATGGTCTTTCAGGCCTTGTGTGA
T.rangeli.partial               ATCAACGGTTTTGGCCGCATTGGGCGCATGGTCTTCCAGGCCATGTGCGA
Euglena.gracilis                ATCAACGGATTCGGTCGCATTGGCCGCATGGTTTTCCAGGCCCTGTGCGA
Trypanoplasma.borreli           ATTAACGGATTTGGCCGCATCGGTCGTATGGTCTTGCAAGCCATATGCGA

Leptomonas.lactosovorans.parti  GCAGGGCGTGATCGGCAAGGACTTCGACGTTGTCGCCGTCGTCGATATGT
Herpetomonas.pessoai            GCAGGGCGTGCTCGGCAAGGACTTCGACGTTGTCGCGGTCGTGGATATGT
Herpetomonas.muscarum           GCAGGGCGTGCTCGGCAAGGACTTCGATGTTGTCGCCGTCGTGGACATGT
Leptomonas.podlipaevi.5         GGACAACGTCCTCGGCACGGAGATCGACGTGGTGGCGGTGGTGGATATGA
Leptomonas.seymouri             GGACAACGTCCTCGGCAACGAGATCGATGTCGTGGCGGTGGTGGACATGA
Leptomonas.pyrrhocoris          GGACAACGTCCTCGGCAACGAGATCGACGTGGTGGCGGTGGTGGACATGA
Leptomonas.peterhoffi           CGACTACGAGCTCGGTAAAGAGATCGACGTGATCGCCGTGGTGGACATGA
Wallaceina.brevicula            CGACTACGAGCTCGGTAAAGAGATCGACGTGATCGCCGTGGTGGACATGA
Blastocrithidia.gerricola       GGACAACGTGCTCGGCAACGAGCTGGACGTGGTCGCCGTGGTGGACATGA
Leptomonas.sp.Cfm               GGACAACGTGCTCGGCAACGAGATCGACGTCGTCGCCGTGGTGGATATGA
Crithidia.fasciculata           GGACAACGTGCTCGGCACCGAGCTGGACGTTGTCGCCGTGGTGGACATGA
Leishmania.mexicana             CCAGGGTCTTATCGGCACTGAGATCGACGTCGTCGCGGTGGTGGACATGA
Leishmania.tarentolae           CCAGGGTCTTATCGGCACTGAGATCGACGTCGTCGCGGTGGTGGACATGA
Leishmania.major.partial        -------------------------GACGTCGTCGCTGTCGTGGACATGA
Leptomonas.costaricensis        CCAGAACCTCATCGGTAATGAGATTGATGTTGTGGCTGTCGTGGATATGA
Phytomonas.sp                   GGGAAACCATCTCGGCACTGACATCGACGTGGTTGCGGTTGCGGATATGA
T.brucei                        CGACGGCCTCCTCGGGAATGAGATTGATGTCGTTGCTGTTGTGGACATGA
T.vivax.partial                 -------------------------GATGTTGTGGCTGTTGTTGACATGA
T.cruzi                         GGACGGCCTTCTCGGGACGGAGATTGACGTCGTGGCGGTGGTCGATATGA
T.rangeli.partial               GGCAGACCTCCTCGGAACGGAGATTGAGGTCGTTGCGGTGGTTGATATGA
Euglena.gracilis                CCAGGGACTCTTGGGGACAACATTCGACGTGGTTGGTGTCGTTGACATGG
Trypanoplasma.borreli           CCAGGGCCTTCTCGGTACTGAGATTGATGTTGTCGCTGTAGTTGTCAGAT

Leptomonas.lactosovorans.parti  CGACCGACGCCGAGTACTTCGCCTACCAGATGAAGTACGACAGCGTGCAC
Herpetomonas.pessoai            CGACGGACGCTGAGTACTTTGCGTACCAGATGAAGTACGACTCTGTGCAC
Herpetomonas.muscarum           CCACCGACGCCGAGTACTTCGCCTACCAGATGAAGTACGACTCCGTCCAC
Leptomonas.podlipaevi.5         GCACGGACGCCGAGTACTTCGCGTACCAGATGAAGTTCGACACGGTGCAC
Leptomonas.seymouri             GCACGGACGCCGAGTACTTCGCGTACCAGATGAAGTACGACACGGTGCAC
Leptomonas.pyrrhocoris          GCACGGACGCCGAGTACTTCGCGTACCAGATGAAGTACGACACGGTGCAC
Leptomonas.peterhoffi           GCACGGACGCCGAGTACTTCGCGTACCAGATGAAGTACGACTCGGTGCAC
Wallaceina.brevicula            GCACGGACGCCGAGTACTTCGCGTACCAGATGAAGTACGACTCGGTGCAC
Blastocrithidia.gerricola       GCACGGACGCCGAGTACTTCGCGTACCAGATGAAGTACGACTCGGTGCAC
Leptomonas.sp.Cfm               GCACGGACGCCGAGTACTTCGCGTACCAGATGAAGTTCGACTCCGTCCAC
Crithidia.fasciculata           GCACGGACGCCGAGTACTTCGCGTACCAGATGAAGTTCGACACGGTGCAC
Leishmania.mexicana             GCACGAATGCCGAATACTTTGCATACCAGATGAAGCACGACACGGTGCAC
Leishmania.tarentolae           GCACGAATGCCGAATACTTTGCATATCAGATGAAGCACGACACGGTGCAC
Leishmania.major.partial        GCACGAATGCTGAATACTTCGCGTACCAGATGAAGTACGACACGGTGCAC
Leptomonas.costaricensis        GCACTAACGCGGACTACTTCGCGTACCAGATGCGGCACGACTCGGTGCAC
Phytomonas.sp                   GCACAGACGCCGAGTACTTCTCCTACCAGATCGTGGACGACTCCGTGCAC
T.brucei                        ACACGGACGCTCGCTACTTCGCCTATCAGATGAAGTACGACTCCGTGCAC
T.vivax.partial                 ACACGGATGCCAAGTACTTTGCCTACCAGATGAAGTACGACAGCGTGCAC
T.cruzi                         ACACGGATGCCGAGTACTTTGCGTACCAGATGCGTTACGACACCGTGCAT
T.rangeli.partial               GTACAGATGCAGAGTACTTTGCGTACCAGTTGCGCTACGACTCTGTGCAC
Euglena.gracilis                CCACTGATGCAGATTACTTTGCCTACCAGATGAAATACGACTCTGTTCAT
Trypanoplasma.borreli           CCCCTGACGCTGATTACTTATCTTATCGGTTGCGCTATGACTCTGTTCAT

Leptomonas.lactosovorans.parti  GGCAAGCCCAAGT---ACACCGTCGAGGTCGCCAAGAGCTCCCCGTCTGT
Herpetomonas.pessoai            GGCAAGCCCAAGT---ACACGGTGGAGGTCGCGAAGAGCTCTCCGTCTGT
Herpetomonas.muscarum           GGCAAGCCCAAGT---ACAGCGTGACGGTCGCCACCAGCTCCCCGTCCGC
Leptomonas.podlipaevi.5         GGTCGCCCGAAGT---ACACGGTGGAGGTGGCGAAGAGCGCGCCCGAGGT
Leptomonas.seymouri             GGCCGCCCGAAGT---ACACGGTGGAGGTGGCGAAGAGCTCTGCCGCGGT
Leptomonas.pyrrhocoris          GGCCGCCCGACGT---ACACGGTGGAGGTTGCGAAGAGCGCGCCGGAGGT
Leptomonas.peterhoffi           GGCCGCCCGAAGT---ACACGGTGGAGGTGGCGAAGAGCTCTCCGTCGAT
Wallaceina.brevicula            GGCCGCCCGAAGT---ACACGGTGGAGGTGGCGAAGAGCTCTCCGTCGAT
Blastocrithidia.gerricola       GGCCGCCCGAAGT---ACACGGTGGAGGTGGCGAAGAGCTCTCCGTCGAT
Leptomonas.sp.Cfm               GGCCGCCCGAAGT---ACACGGTGGAGGTCGCCAAGAGCTCGCCGTCCGC
Crithidia.fasciculata           GGCCGCCCGAAGT---ACACGGTGGAGGTGGCGAAGAGCTCGCCGTCGGC
Leishmania.mexicana             GGCCGCCCGAAAT---ACACAGTGGAGGCTGTGAAGAGCAGCCCATCCGT
Leishmania.tarentolae           GGCCGCCCGAAAT---ACACAGTGGAGGCTGTGAAGAGCAGCCCATCCGT
Leishmania.major.partial        GGTCGCCCGGAGT---ACACGGTGGAGGCTGTGAAGAGCACCCCGTCCGT
Leptomonas.costaricensis        GGCCGCCCGAAGT---ACACCGTTGAGGCTATTAAGAGCAGCCCGTCTGC
Phytomonas.sp                   GGCAAGCCGCGCTCCTATGGCGTCGAGGTGGCGAAGAGCAACCCGTCTGT
T.brucei                        GGCAAGTTCAAGC---ACTCTGTGTCGACTACGAAGAGCAAGCCATCCGT
T.vivax.partial                 GGCAAGTTCAAGC---ACTCCGTGTCAACCACAAAGAGCAGCCCGTCGGC
T.cruzi                         GGCAAGTTCAAGT---ACGAGGTGACGACGACGAAGAGCAGCCCCTCCGT
T.rangeli.partial               GGAAGGCTCAAGC---ACAAGGTGACAACTGCGAAGAGCAGCCCCTCCGT
Euglena.gracilis                GGAAAGTTCAAGC---ACACCGTCTCCACCAAGAAAAGCGATGCAAACCT
Trypanoplasma.borreli           GGCCGCTTCAAGC---ATAAGGTAGATGTTGCCGCAAGTCCCGAATGTGA

Leptomonas.lactosovorans.parti  G---AAGAAGCCGGACGTGCTCGTCGTGAACGGCCACCGCATCCAGTGCG
Herpetomonas.pessoai            G---AAGAAGCCGGATGTGCTTGTGGTGAACGGCCACCGCATCCAGTGCG
Herpetomonas.muscarum           G---AAGAAGCCGGATGTGCTCGTGGTGAACGGCCACCGCATCCAGTGTG
Leptomonas.podlipaevi.5         G---AAGAAGCCGGACGTGCTCGTGGTGAACGGCCACCGCATCCTGTGCG
Leptomonas.seymouri             G---AAGAAGCCGGATGTGCTTGTGGTGAACGGCCACCGCATCCTGTGCG
Leptomonas.pyrrhocoris          G---AAGAAGCCGGATGTGCTTGTGGTGAACGGCCACCGCATCCTGTGCG
Leptomonas.peterhoffi           G---AAGAAGCCGGATGTGCTGGTCGTCAACGGCCACCGCATCCTGTGCG
Wallaceina.brevicula            G---AAGAAGCCGGATGTGCTGGTCGTCAACGGCCACCGCATCCTGTGCG
Blastocrithidia.gerricola       G---AAGAAGCCGGATGTGCTGGTCGTCAACGGCCACCGCATCCTGTGCG
Leptomonas.sp.Cfm               G---AAGAAGCCGGATGTGCTGGTGGTGAACGGCCACCGCATCCTGTGCG
Crithidia.fasciculata           G---AAGAAGCCGGACGTGCTGGTGGTGAACGGCCACCGCATCCTGTGCG
Leishmania.mexicana             G---GAGACGGCGGATGTGCTTGTGGTGAACGGCCACCGTATCAAGTGCG
Leishmania.tarentolae           G---GAGACGGCGGATGTGCTTGTGGTGAACGGCCACCGTATCAAGTGCG
Leishmania.major.partial        G---AAGACGCCAGATGTGCTTGTGGTGAACGGCCACCGCATCAAGTGCG
Leptomonas.costaricensis        G---AAGGAGTCCGATGTGCTTGTGGTGAACGGCCACAAGATCAAGTGCG
Phytomonas.sp                   G---GAGAAGCCGGATGTGCTCGTGGTGAACGGCCACCGCATCCAGTGTG
T.brucei                        C---GCGAAGGATGATACTCTCGTCGTCAACGGCCACCGCATCCTTTGCG
T.vivax.partial                 G---AAGAGTGATGACACCCTTGTTGTGAACGGCCACCGCATCCTGTGTG
T.cruzi                         T---GCGAAGGACGACACGCTTGTGGTGAATGGCCACCGTATCCTGTGCG
T.rangeli.partial               G---GCCAATGATGACGTGCTGGTGGTGAATGGGCACCGCATTCTGTGCG
Euglena.gracilis                G---GCGGAAGCTGATATCATTGTGGTCAATGGGCATGAGATCAAGTGCA
Trypanoplasma.borreli           GCCCGGAAAGCATGATACCCTTGTGGTAAATGGCCATAAAGTAAAGTGCG

Leptomonas.lactosovorans.parti  TCAAGGCCGAGCGCAACCCCGCGGACCTGCCATGGGGCAAGTACGGCGTG
Herpetomonas.pessoai            TGAAGGCGCAGCGCAACCCCGCTGACCTGCCCTGGAGCAAGCTCGGCGTG
Herpetomonas.muscarum           TGAAGGCCCAGCGCAACCCCGCTGACCTGCCGTGGGGCAAGCTCGGCGTC
Leptomonas.podlipaevi.5         TGAAGGCGCAGCGCAACCCGGCGGACCTGCCGTGGGGCAAGCTCGGTGTG
Leptomonas.seymouri             TGAAGGCGCAGCGCAACCCGGCGGACCTGCCGTGGGGCAAGCTTGGCGTG
Leptomonas.pyrrhocoris          TGAAGGCGCAGCGCAACCCTGCGGACCTGCCGTGGGGCAAGCTGGGCGTG
Leptomonas.peterhoffi           TGAAGGCGGAGCGCAACCCCGCGGACCTGCCGTGGAAGAAGCTCGGCGTG
Wallaceina.brevicula            TGAAGGCGGAGCGCAACCCCGCGGACCTGCCGTGGAAGAAGCTCGGCGTG
Blastocrithidia.gerricola       TGAAGGCGGAGCGCAACCCCGCGGACCTGCCGTGGAAGAAGCTCGGCGTG
Leptomonas.sp.Cfm               TGAAGGCGGAGCGCAACCCGGCGGACCTGCCGTGGGGCAAGCTCGGCGTG
Crithidia.fasciculata           TGAAGGCGGACCGCAACCCGGCGGACCTGCCGTGGGGCAAGCTCGGCGTG
Leishmania.mexicana             TGAAGGCGCAGCGCAACCCTGCGGACCTGCCGTGGGGCAAGCTTGGTGTG
Leishmania.tarentolae           TGAAGGCGCAGCGCAACCCTGCGGACCTGCCGTGGGGCAAGCTTGGTGTG
Leishmania.major.partial        TGAAGGCGCAGCGCAACCCCGCGGATCTGCCGTGGGGCAAGCTCGGCGTG
Leptomonas.costaricensis        TGAAGGCGCAGCGCAACCCGGCGGACCTGCCGTGGGGCCAGCTCGGCGTG
Phytomonas.sp                   TGAAGGCAGCCCGCAACCCCGCTGATCTGCCGTGGGGTAAGCTTGATATC
T.brucei                        TGAAAGCGCAGCGGAACCCTGCGGACCTCCCATGGGGAAAGCTTGGTGTG
T.vivax.partial                 TGAAGGCGCAGCGCAACCCCGCGGACCTACCGTGGGGCAAGTTGGGCGTT
T.cruzi                         TGAAGGCGCAGCGGAACCCGGCGGATCTCCCATGGGGCAAGCTTGGTGTG
T.rangeli.partial               TGAGGGCGCAGCGCAACCCGGCGGACCTCCCATGGGGCAAACTCGGTGTG
Euglena.gracilis                TCATGGCCACCCGAAACCCAGAGGACCTTCCTTGGGGCAAGTTGGGCGTG
Trypanoplasma.borreli           TGAAGGGAGGCCCTGATCCTTCTACACTCCCATGGGGAAAACTGGGTGTT

Leptomonas.lactosovorans.parti  GAGTACGTGGTGGAGTCGACCGGTCTGTTCACGAACAAGCTCAAGGCTGA
Herpetomonas.pessoai            GAGTACGTGATCGAGTCGACTGGTCTGTTCACGAACAAGGCCAAGGCTGA
Herpetomonas.muscarum           GAGTACGTGATCGAGTCCACGGGCCTGTTCACGAACAAGGCCAAGGCTGA
Leptomonas.podlipaevi.5         GAGTACGTGATCGAGTCGACCGGCCTGTTCACGGACAAGGTGAAGGCTGA
Leptomonas.seymouri             GACTACGTGATCGAGTCGACCGGCCTGTTCACGGACAAGGTGAAGGCTGA
Leptomonas.pyrrhocoris          GACTACGTGATCGAGTCGACCGGCCTGTTCACGAACAAGGCGAAGGCGGA
Leptomonas.peterhoffi           GACTACGTGATCGAATCGACCGGCCTGTTCACGGACAAGGCGAAGGCTGA
Wallaceina.brevicula            GACTACGTGATCGAGTCCACCGGCCTGTTCACGGACAAGGCGAAGGCTGA
Blastocrithidia.gerricola       GACCACGTGATCGAGTCCACCGGCCTGTTCACGGACAAGGCGAAGGCTGA
Leptomonas.sp.Cfm               GAGTACGTGATCGAATCCACCGGCCTGTTCACCGACAAAGCCAAGGCTGA
Crithidia.fasciculata           GACTACGTGATCGAGTCCACCGGCCTGTTCACGGACAAGGCGAAGGCGGA
Leishmania.mexicana             GACTATGTGATCGAGTCTACCGGCCTGTTCACGGACAAGTTGAAGGCTGA
Leishmania.tarentolae           GACTATGTGATCGAGTCTACCGGCCTGTTCACGGACAAGTTGAAGGCTGA
Leishmania.major.partial        GATTACGTGATCGAGTCTACTGGCCTGTTCACGGACAAGTTGCAGGCCGA
Leptomonas.costaricensis        GACTACGTGATTGAGTCGACCGGCCTGTTCACGGACAAGGTGAAGGCGGA
Phytomonas.sp                   GAGTATGTGATCGAGTCCACCGGGCTCTTCACGAAGAAGACCCAGGCTGA
T.brucei                        GAGTATGTGATTGAGTCAACTGGCCTCTTCACAGTGAAATCTGCTGCCGA
T.vivax.partial                 GAGTATGTGATTGAGTCCACTGGTTTGTTCACTGTCAAGTCTGCGGCTGA
T.cruzi                         GAGTACGTAATTGAATCAACGGGCCTGTTCACCGCCAAGGCGGCGGCGGA
T.rangeli.partial               GAGTACGTAATTGAGTCAACGGGTCTGTTTACTTCCAAGGCGGCGGCGGA
Euglena.gracilis                GAGTACGTTGTCGAGTCAACTGGGCTCTTCACTGAGGCTGACAAGGCCCG
Trypanoplasma.borreli           GACTATGTCATTGAATCCACAGGATTTTTCACAGATAAGTCCAAGGCCGA

Leptomonas.lactosovorans.parti  GGGCCACATCAAGGGCGGCGCCAAGAAGGTCATCATCAGC-GCGCCTGCC
Herpetomonas.pessoai            GGGCCACCTCAAGGGCGGCGCGAAGAAGGTGATCATCAGC-GCGCCTGCC
Herpetomonas.muscarum           GGGCCACCTCAAGGGCGGCGCGAAGAAGGTCATCATCAGC-GCCCCCGCC
Leptomonas.podlipaevi.5         GGGCCACGTGAAGGGCGGCGCGAAGAAGGTGGTGATCAGC-GCGCCTGCG
Leptomonas.seymouri             GGGCCACGTGAAGGGCGGCGCGAAGAAGGTGGTGATCAGC-GCGCCGGCG
Leptomonas.pyrrhocoris          GGGCCACGTGAAGGGCGGCGCGAAGAAGGTCGTGATCAGC-GCTCCGGCG
Leptomonas.peterhoffi           GGGCCACGTGAAGGGCGGCGCCAAGAAGGTCGTCATCAGC-GCGCCGGCG
Wallaceina.brevicula            GGGCCACGTGAAGGGCGGCGCCAAAGAAGTCGTCATCAGC-GCGCCGGCG
Blastocrithidia.gerricola       GGGTCACGTGAAGGGCGGCGCCAAGAA-GTCGTCATCAGCCGCGCCGGCG
Leptomonas.sp.Cfm               GGGCCACGTTAAGGGCGGCGCCAAGAAGGTGGTGATCAGC-GCTCCGGCC
Crithidia.fasciculata           GGGCCACGTGAAGGGCGGCGCGAAGAAGGTGGTGATCAGC-GCGCCGGCG
Leishmania.mexicana             GGGCCACATCAAGGGTGGCGCGAAGAAGGTTGTGATCAGC-GCCCCGGCG
Leishmania.tarentolae           GGGCCACATCAAGGGTGGCGCGAAGAAGGTTGTGATCAGC-GCCCCGGCG
Leishmania.major.partial        GGGTCACATCAAGGGTGGTGCGAAGAAGGTCGTGATCAGC-GCCCCGGCG
Leptomonas.costaricensis        GGGCCACATCAAGGGCGGCGCGAAGAAGGTCGTGATCAGC-GCGCCGGCG
Phytomonas.sp                   GGGTCACATCAAGGGAGGGGCCAAGAAGGTGGTCATCAGC-GCTCCCGCA
T.brucei                        GGGTCACCTCCGTGGTGGTGCTCGCAAGGTTGTCATCAGT-GCCCCCGCC
T.vivax.partial                 GGGCCACTTGCGCGGTGGCGCCCGGAAGGTTGTCATCAGC-GCCCCCGCC
T.cruzi                         GGGCCACCTGCGCGGCGGTGCACGGAAGGTCGTCATCAGC-GCTCCCGCC
T.rangeli.partial               GGGCCACTTGCGGGGCGGTGCACGAAAGGTCATCATCAGT-GCTCCCGCT
Euglena.gracilis                TGGACATCTTAAGGCTGGTGCCAAGAAGGTCATCATTTCT-GCACCTGGC
Trypanoplasma.borreli           GGGTCACATCAAAGCTGGTGCTAAGAAGGTTATCATTT-CAGCCCCAGCT

Leptomonas.lactosovorans.parti  TCCGGCGGCGCCAAGACGATCGTGATGGGCGT-GAACAACCAGGAGTACA
Herpetomonas.pessoai            TCTGGCGGCGCCAAGACGATCGTGATGGGCGT-GAACAACCAGGAGTACA
Herpetomonas.muscarum           TCCGGCGGCGCCAAGACCATCGTGATGGGCGT-GAACAACGAGGAGTACA
Leptomonas.podlipaevi.5         TCCGGCGGTGCGAAGACGATCGTGATGGGCGT-GAACCAGAGCGAGTACG
Leptomonas.seymouri             TCCGGCGGTGCGAAGACGATCGTGATGGGCGT-GAACCAGAACGAGTACG
Leptomonas.pyrrhocoris          TCCGGCGGTGCGAAGACGATCGTGATGGGCGT-GAACCAGCACGAGTACG
Leptomonas.peterhoffi           TCCGGCGGTGCCAAGACGATCGTGATGGGCGT-GAACCAGCACGAGTACG
Wallaceina.brevicula            TCCGGCGGTGCCAAGACGATCGTGATGGGCGT-GAACCAGCACGAGTACG
Blastocrithidia.gerricola       TCCGGCGGTGCCAAGACGATCGTGATGGGCGT-GAACCAGCACGAGTACG
Leptomonas.sp.Cfm               TCCGGCGGCGCCAAGACCATCGTGATGGGCGT-GAACCAGCACGAGTACA
Crithidia.fasciculata           TCTGGCGGCGCCAAGACGATCGTGATGGGCGT-GAACCAGCACGAGTACA
Leishmania.mexicana             TCTGGCGGCGCCAAGACGATTGTGATGGGCGT-GAACCAGCACGAGTACT
Leishmania.tarentolae           TCTGGCGGCGCCAAGACGATTGTGATGGGCGT-GAACCAGCACGAGTACT
Leishmania.major.partial        TCTGGCGGCGCCAAGACGATCGTGATGGGCGT-GAACCAGCACGAGTACT
Leptomonas.costaricensis        TCCGGCGGCGCCAAGACGATCGTGATGGGCGT-GAACCAGCAGGAGTACT
Phytomonas.sp                   TCTGGCGGTGTCAAGACGATCGTGATGGGCGT-GAACGAGAAGGAGTATG
T.brucei                        TCTGGTGGCGCCAAGACGTTCGTGATGGGCGT-GAACCACAACAACTACA
T.vivax.partial                 TCCGGTGGTGCGAAGACCTTCGTGATGGGCGT-GAACCACCACGAGTACA
T.cruzi                         TCTGGTGGCGCCAAGACACTTGTGATGGGCGT-GAACCATCACGAGTACA
T.rangeli.partial               TCCGGTGGCGCCAAGACGCTCGTGATGGGCGTTGAACCACGA-GGATACA
Euglena.gracilis                AAAGGTGACCTGAAGACCATTGTGATGGGTGT-GAACCACACAGAGTACC
Trypanoplasma.borreli           AAGGGAGGCGCCAAGACCATTGTGATGGGTGT-AAACCAGCATGAGTACA

Leptomonas.lactosovorans.parti  ACCCGAGCAGCCACAGCGTCGTGTCGAACGCGTCCTGCACGACGAACTGC
Herpetomonas.pessoai            ACCCCAGCAGCCACAGCGTTGTGTCGAACGCGTCCTGCACGACCAACTGC
Herpetomonas.muscarum           ACCCCAAGTCCCACCACGTCGTGTCCAACGCGTCGTGCACGACCAACTGC
Leptomonas.podlipaevi.5         ACCCGGCCAAGCACCACGTTGTGTCGAACGCGTCCTGCACGACCAACTGC
Leptomonas.seymouri             ACTCCGCCAAGCACCACGTCGTGTCGAACGCGTCCTGCACGACCAACTGC
Leptomonas.pyrrhocoris          ACCCCGCCAAGCACCACGTTGTGTCGAACGCGTCGTGCACGACCAACTGC
Leptomonas.peterhoffi           ACCCGGCCACGCACCACGTCGTGTCCAACGCGTCGTGCACGACGAACTGC
Wallaceina.brevicula            ACCCGGCCACGCACCACGTCGTGTCCAACGCGTCGTGCACGACGAACTGC
Blastocrithidia.gerricola       ACCCGGCCACGCACCACGTCGTGTCCAACGCGTCGTGCACGACGAACTGC
Leptomonas.sp.Cfm               ACCCGGCCACGCACCACGTCGTGTCCAACGCGTCCTGCACCACCAACTGC
Crithidia.fasciculata           ACCCGGCCACGCACCACGTCGTGTCGAACGCGTCCTGCACGACCAACTGC
Leishmania.mexicana             CGCCGGCGTCGCACCACGTGGTGTCGAATGCGTCGTGCACGACCAACTGC
Leishmania.tarentolae           CGCCGGCGTCGCACCACGTGGTGTCGAATGCGTCGTGCACGACCAACTGC
Leishmania.major.partial        CGCCGGCGTCGCACCACGTGGTGTCGAATGCGTCGTGCACGACCAACTGC
Leptomonas.costaricensis        CGCCGGCGTCGCACAACGTGGTGTCGAACGCGTCGTGCACGACCAACTGC
Phytomonas.sp                   ACCCGTCGTCTCACCACATCGTGTCGAACGCGTCGTGCACGACCAACTGC
T.brucei                        ACCCTCGTGAACAACATGTGGTGTCGAACGCCTCATGCACAACTAATTGC
T.vivax.partial                 ACCCTCGCGAGCACCATGTTGTGTCCAACGCCTCGTGCACGACCAACTGC
T.cruzi                         ACCCCAGTGAGCACCACGTTGTGTCTAACGCGTCATGCACGACCAATTGC
T.rangeli.partial               ACCCCCGTGAGCACCACGTGGTGTCGAACGCGTCGTGCACAACCAACTGC
Euglena.gracilis                AGGCCAGCATG---GATGTTGTGTCCAATGCCTCTTGCACAACGAACTGT
Trypanoplasma.borreli           ACCCTAATGAGCATTCTGTTGTATCCAATGCATCTTGTACTACTAATGGT

Leptomonas.lactosovorans.parti  TTCGCCCCGTTGGTGCACGTGCTGATCAAGGAGGGCTTTGGCGTGGAGAC
Herpetomonas.pessoai            CTTGCCCCGCTGGTGCACGTGCTGCTGAAGGAGGGCTTCGGCGTGGAGAC
Herpetomonas.muscarum           CTCGCTCCCCTCGTCCACGTGCTGACCAAGGAGGGCTTCGGCATCCAGAC
Leptomonas.podlipaevi.5         CTCGCCCCGATCGTGCACGTGCTGACGAAGGTGAACATCGGCATCGAGAC
Leptomonas.seymouri             CTCGCCCCGATCGTGCACGTGCTGACGAAGGAGGGCTTCGGCGTCGAGAC
Leptomonas.pyrrhocoris          CTCGCCCCGATCGTGCACGTGCTGACGAAGGAGAACTTCGGCATCGAGAC
Leptomonas.peterhoffi           CTCGCCCCGATCGTCCACGTGCTCACCAAGGAGAACTTCGGCATCGAGAC
Wallaceina.brevicula            CTCGCCCCGATCGTCCACGTGCTCACCAAGGAGAACTTCGGCATCGAGAC
Blastocrithidia.gerricola       CCCGCCCCGATCGTCCACGTGCTCACCAAGGAGAACTTCGGCATCGAGAC
Leptomonas.sp.Cfm               CTGGCCCCGATCGTGCACGTGCTGACGAAGGAGAACTTCGGCATCGAGAC
Crithidia.fasciculata           CTGGCGCCGATCGTGCACGTGCTGACCAAGGAGAACTTCGGCATCGAGAC
Leishmania.mexicana             CTGGCCCCCATTGTGCACGTGCTGACGAAGGAGAACTTCGGCATCGAGAC
Leishmania.tarentolae           CTGGCCCCCATTGTGCACGTGCTGACGAAGGAGAACTTCGGCATCGAGAC
Leishmania.major.partial        CTGGCCCCCATTGTGCACGTGCTGACGAAGGAGAACTTCGGCATCGAGAC
Leptomonas.costaricensis        CTCGCCCCGATCGTGCACGTGCTGACGAAGGAGAACTTCGGCATCGAGAC
Phytomonas.sp                   CTCGCGCCCCTTGTGCACGTTCTGACGAAGGAGGGCTTCGGGCTGGAGAC
T.brucei                        CTCGCCCCACTCGTGCACGTGTTGGTGAAGGAGGGCTTCGGCATCTCCAC
T.vivax.partial                 CTTGCACCTCTTGTGCACGTGCTGGTGAAGGAGGGCTTTGGTGTGTCCAC
T.cruzi                         CTTGCGCCCATTGTGCACGTCCTGGTGAAGGAGGGATTCGGCGTGCAGAC
T.rangeli.partial               CTTGGGCNTATTGTGCATGTCCTTGTGAAGGAGGGCTTTGGCGTGGAGAC
Euglena.gracilis                CTTGCTCCTCTTGTTCACGTGCTGTTGAAGGAGGGCGTTGGTGTGGAGAA
Trypanoplasma.borreli           CTCGCACCTATTGTACACGTGTTGAATAAAGAAGGCTTTGGCATAAAGGT

Leptomonas.lactosovorans.parti  TGGCNTGATGACCACCATCCACTCATACACCGCCACCCAGAAGACGGTGG
Herpetomonas.pessoai            TGGCCTGATGACCACCATCCACTCGTACACCGCCACGCAGAAGACCGTCG
Herpetomonas.muscarum           TGGCCTCATGACCACGATCCACGCCTACACAGCCACGCAGAAGACGGTCG
Leptomonas.podlipaevi.5         CGGCCTGATGACGACCATCCACTCCTACACTGCCACGCAGAAGACGGTGG
Leptomonas.seymouri             CGGCCTGATGACGACCATCCACTCCTACACTGCCACGCAGAAGACGGTGG
Leptomonas.pyrrhocoris          GGGCCTGATGACGACCATCCACTCCTACACCGCCACGCAGAAGACGGTGG
Leptomonas.peterhoffi           CGGCCTGATGACCACCATCCACTCCTACACTGCCACGCAGAAGACGGTGG
Wallaceina.brevicula            CGGCCTGATGACCACCATCCACTCCTACACTGCCACGCAGAAGACGGTGG
Blastocrithidia.gerricola       CGGCCTGATGACCACCATCCACTCCTACACTGCCACGCAGAAGACGGTGG
Leptomonas.sp.Cfm               CGGCCTGATGACCACCATCCACTCCTACACTGCTACGCAGAAGACGGTGG
Crithidia.fasciculata           CGGCCTGATGACCACCATCCACTCCTACACGGCGACGCAGAAGACGGTGG
Leishmania.mexicana             CGGTCTGATGACCACCATTCACTCCTACACGGCAACGCAGAAGACGGTGG
Leishmania.tarentolae           CGGTCTGATGACCACCATTCACTCCTACACGGCAACGCAGAAGACGGTGG
Leishmania.major.partial        CGGTCTGATGACCACCATTCACTCCTACACGGCAACGCAGAAGACGGTGG
Leptomonas.costaricensis        CGGCCTGATGACGACGATCCACTCGTACACGGCGACGCAGAAGACGGTGG
Phytomonas.sp                   TGGTCTGATGACCACGATCCACTCGTACACGGCGACCCAGAAGACTGTGG
T.brucei                        TGGCCTCATGACCACTGTTCACTCGTACACAGCCACACAAAAGACCGTTG
T.vivax.partial                 TGGCCTCATGACGACAATTCACTCATATACCGCCACACAGAAGACTGTTG
T.cruzi                         CGGCCTCATGACGACGATCCACTCGTACACAGCAACGCAGAAGACGGTGG
T.rangeli.partial               CGGGCTCATGACGACGATTCATTCTAACACGGCAACGCAGAAGACGGTGG
Euglena.gracilis                GGGTCTGATGACCACCATCCATGCCTACACAGCAACCCAGAAGACTGTCG
Trypanoplasma.borreli           GGGCCTGATCACTACATTGCACGCTTATACCGCTACTCAGAAGACAGTTG

Leptomonas.lactosovorans.parti  ACGGCGTGTCGCTGAAGGACTGGCGTGGTGGCCGCGCTGCGGCGATGAAC
Herpetomonas.pessoai            ATGGCGTCTCCCTGAAGGACTGGCGCGGCGGCCGTGCTGCTGCCATGAAC
Herpetomonas.muscarum           ACGGCGTGTCCCTGAAGGACTGGCGTGGTGGCCGCGCTGCGGCCGTCAAC
Leptomonas.podlipaevi.5         ACGGCGTGTCGATCAAGGACTGGCGCGGTGGCCGCGCTGCCGCCATGAAC
Leptomonas.seymouri             ACGGCGTGTCGATCAAGGACTGGCGCGGTGGCCGCGCTGCTGCGGTGAAC
Leptomonas.pyrrhocoris          ACGGCGTGTCGATCAAGGACTGGCGCGGCGGCCGCGCTGCTGCGATGAAC
Leptomonas.peterhoffi           ACGGCGTGTCCATCAAGGACTGGCGTGGCGGCCGCGCTGCTGCGGTGAAC
Wallaceina.brevicula            ACGGCGTGTCCATCAAGGACTGGCGCGGCGGCCGCGCTGCTGCGGTGAAC
Blastocrithidia.gerricola       ACGGCGTGTCCATCAAGGACTGGCGCGGCGGCCGCGCTGCTGCGGTGAAC
Leptomonas.sp.Cfm               ACGGCGTGTCCATCAAGGACTGGCGTGGCGGCCGCGCGGCTGCCGTGAAC
Crithidia.fasciculata           ACGGCGTGTCGATCAAGGACTGGCGCGGCGGCCGCGCGGCTGCGGTGAAC
Leishmania.mexicana             ACGGCGTGTCGCTCAAGGACTGGCGTGGTGGCCGCGCGGCGGCCGTAAAC
Leishmania.tarentolae           ACGGCGTGTCGCTCAAGGACTGGCGTGGTGGCCGCGCGGCGGCCGTAAAC
Leishmania.major.partial        ACGGCGTGTCGCTCAAGGACTGGCGTGGTGGCCGCGCGGCGGCCGTAAAC
Leptomonas.costaricensis        ACGGCGTGTCGCTGAAGGACTGGCGCGGTGGCCGCGCTGCGGCCGTGAAC
Phytomonas.sp                   ACGGCGTGTCGATCAAGGACTGGCGTGGTGGCCGCGCTGCCGCGATCAAC
T.brucei                        ATGGTGTTTCCGTCAAGGACTGGCGTGGTGGTCGCGCTGCAGCCCTGAAC
T.vivax.partial                 ATGGTGTGTCAATCAAGGACTGGCGCGGTGGCCGCGCGGCAGCACTCAAC
T.cruzi                         ACGGTGTGTCGGTGAAGGACTGGCGTGGCGGTCGTGCGGCTGCTGTCAAC
T.rangeli.partial               ATGGTGTGTCACACAGGGACTGGCGCGGCGGTCGCGCGGCCGCGATCAAC
Euglena.gracilis                ATGGACCCTCAAAGAAGGACTGGCGTGGTGGCCGTGCTGCAGCCATTAAC
Trypanoplasma.borreli           ACGGCGTCTCCCAGAAGGACTGGCGCGGCGGACGTGCCGCATCTGTGAAC

Leptomonas.lactosovorans.parti  ATCATCCCGTCGACGACCGGTGCCGCCAAGGCCGTGGGCGAGGTGCTGCC
Herpetomonas.pessoai            ATCATCCCGTCGACGACGGGTGCTGCCAAGGCCGTTGGTGAGGTGCTGCC
Herpetomonas.muscarum           ATCATCCCCTCCACGACTGGCGCCGCCAAGGCCGTCGGTGAGGTGAT-CC
Leptomonas.podlipaevi.5         ATCATCCCCAGCACGACCGGTGCGGCCAAGGCTGTGGGCATGGTGAT-CC
Leptomonas.seymouri             ATCATCCCGAGCACGACCGGTGCGGCCAAGGCCGTGGGCATGGTGAT-CC
Leptomonas.pyrrhocoris          ATCATCCCCAGCACGACCGGTGCGGCGAAGGCCGTGGGCATGGTGAT-CC
Leptomonas.peterhoffi           ATCATCCCCAGCACGACCGGTGCCGCCAAGGCCGTCGGTATGGTGAT-CC
Wallaceina.brevicula            ATCATCCCCAGCACGACCGGTGCCGCCAAGGCCGTCGGTATGGTGAT-CC
Blastocrithidia.gerricola       ATCATCCCCAGCACGACCGGTGCCGCCAAGGCCGTCGGTATGGTGAT-CC
Leptomonas.sp.Cfm               ATCATCCCCAGCACGACCGGCGCCGCCAAGGCCGTGGGTATGGTGAT-TC
Crithidia.fasciculata           ATCATCCCCAGCACGACCGGCGCTGCCAAGGCCGTGGGCATGGTGAT-CC
Leishmania.mexicana             ATCATCCCGAGCACGACTGGCGCCGCGAAGGCCGTGGGCATGGTGAT-TC
Leishmania.tarentolae           ATCATCCCGAGCACGACTGGCGCCGCGAAGGCCGTGGGCATGGTGAT-TC
Leishmania.major.partial        ATCATCCCGAGCACA-----------------------------------
Leptomonas.costaricensis        ATCATCCCGAGCACGACCGGCGCGGCGAAGGCCGTCGGCATGGTGAC-CC
Phytomonas.sp                   ATAATCCCCAGCACGACTGGTGCGGCCAAGGCTGTGGGCGAGGTGAT-CC
T.brucei                        ATCATCCCAAGCACCACTGGTGCCGCCAAAGCCGTCGGCATGGTGAT-CC
T.vivax.partial                 ATCATTCCCAGCACG-----------------------------------
T.cruzi                         ATCATTCCGAGCACGACTGGTGCGGCGAAGGCGGTGGGCATGGTGAT-TC
T.rangeli.partial               GTTATTCCGAGCACGACTGGTGCGGCCAAGGCGGTGGGCATGGTGAT-TC
Euglena.gracilis                ATCATCCCCTCTACCACCGGAGCTGCCAAGGCTGTTGGTGAGGTGTTGCC
Trypanoplasma.borreli           ATCATCCCCAGCAGCACTGGTGCCGCCAAAGCTGTAGGTGAGGTACTGCC

Leptomonas.lactosovorans.parti  CGTG-ACGAAGGGCAAGCTGACCGGCATGTCCTTCCGCGTGCCCACCCCC
Herpetomonas.pessoai            CGTG-ACCAAGGGCAAGCTGACCGGCATGTCCTTCCGTGTGCCGACGCCG
Herpetomonas.muscarum           CGTCCACGAAGGGCAAGCTCACCGGCATGTCCTTCCGCGTGCCCACCCCC
Leptomonas.podlipaevi.5         CGTCGACGAAGGGCAAGCTGACCGGCATGTCCTTCCGCGTGCCGACGCCG
Leptomonas.seymouri             CGTCGACGAAGGGCAAGCTGACCGGCATGTCCTTCCGCGTGCCGACGCCG
Leptomonas.pyrrhocoris          CGTCGACGAAGGGCAAGCTGACCGGCATGTCCTTCCGCGTGCCGACGCCG
Leptomonas.peterhoffi           CGTCCACCAAGGGCAAGCTGACCGGCATGTCCTTCCGCGTGCCGACGCCG
Wallaceina.brevicula            CGTCCACCAAGGGCAAGCTGACCGGCATGTCCTTCCGCGTGCCGACGCCG
Blastocrithidia.gerricola       CGTCCACCAAGGGCAAGCTGACCGGCATGTCCTTCCGCGTGCCGACGCCG
Leptomonas.sp.Cfm               CCTCCACCAAGGGCAAGCTGACCGGCATGTCCTTCCGCGTGCCGACCCCG
Crithidia.fasciculata           CGTCCACCAAGGGCAAGCTGACCGGCATGTCGTTCCGCGTGCCGACGCCG
Leishmania.mexicana             CGTCCACCAAGGGCAAGCTGACTGGCATGTCCTTCCGCGTGCCGACGCCG
Leishmania.tarentolae           CGTCCACCAAGGGCAAGCTGACTGGCATGTCCTTCCGCGTGCCGACGCCG
Leishmania.major.partial        --------------------------------------------------
Leptomonas.costaricensis        CGTCGACCAAGGGCAAGCTGACCGGCATGTCGTTCCGCGTGCCGACGCCG
Phytomonas.sp                   CCACGACCAAGGGCAAGTTGACGGGCATGGCCTTCCGCGTCCCGACACCC
T.brucei                        CGAGCACTCAGGGCAAGCTTACGGGTATGGCCTTCCGTGTTCCCACGGCT
T.vivax.partial                 --------------------------------------------------
T.cruzi                         CGAGCACCCAGGGCAAGCTGACGGGCATGTCTTTTCGTGTCCCCACCCCG
T.rangeli.partial               CGAGCATGCAGGGCAAACTGACGGGCATGGCATTCCGTGTCCCGACCGCA
Euglena.gracilis                TG-CTGTGAAGGGGAAGCTCACTGGCATGGCCTTCCGCGTGCCAACCCCT
Trypanoplasma.borreli           CGAG-ACCAAAGGTAAACTGACCGGTATGGCCTTCCGTGTGCCCACACCT

Leptomonas.lactosovorans.parti  GACGTGTCCGTNGTCGACCTGACCTTCACCGCTGCCAAGGACACCTCGAT
Herpetomonas.pessoai            GATGTGTCCGTGGTGGACCTGACCTTCACCGCTGCCAAGGACACGTCGAT
Herpetomonas.muscarum           GACGTGTCCGTTGTTGACCTCACCTTCACCGCCAACAAGGACACCTCCAT
Leptomonas.podlipaevi.5         GATGTGTCCGTGGTGGACCTGACGTTCCGCGCGGCCCGCGACACGTCGAT
Leptomonas.seymouri             GATGTGTCCGTGGTGGACCTGACGTTCCGCGCGACCCGCGACACGTCGAT
Leptomonas.pyrrhocoris          GATGTGTCGGTGGTGGACCTGACCTTCCGCGCCAACCGCGACGCCTCGAT
Leptomonas.peterhoffi           GACGTGTCCGTGGTCGACCTGACCTTCCGCGCCACCCGCGACACCTCCAT
Wallaceina.brevicula            GACGTGTCCGTGGTCGACCTGACCTTCCGCGCCACCCGCGACACCTCCAT
Blastocrithidia.gerricola       GACGTGTCCGTGGTCGACCTGACCTTCCGCGCCACCCGCGACACCTCCAT
Leptomonas.sp.Cfm               GACGTGTCCGTCGTCGACCTGACCTTCCGCGCCACCCGCGACACCTCCAT
Crithidia.fasciculata           GATGTGTCGGTGGTCGACCTGACCTTCCGCGCCACCCGCGACACGTCCAT
Leishmania.mexicana             GACGTGTCCGTCGTGGATTTGACGTTCCGCGCAACGCGCGACACGTCTAT
Leishmania.tarentolae           GACGTGTCCGTCGTGGATTTGACGTTCCGCGCAACGCGCGACACGTCTAT
Leishmania.major.partial        --------------------------------------------------
Leptomonas.costaricensis        GACGTGTCCGTCGTGGACCTGACGTTCCGCGCCACGCGCGACACGTCGAT
Phytomonas.sp                   GACGTGTCGGTGGTGGACTTGACTTTCACGGCCACCCGCGACACATCGAT
T.brucei                        GATGTCTCTGTGGTGGACCTTACCTTCATTGCGACGCGCGACACGAGCAT
T.vivax.partial                 --------------------------------------------------
T.cruzi                         GACGTGTCCGTGGTGGATCTCACCTTCACTGCGGCGCGCGACACCAGCAT
T.rangeli.partial               GACGTTTCAGTGGTGGACCTCACCTTCACGGCGAAGCGCGACACCAGCAT
Euglena.gracilis                GATGTGTCTGTTGTTGATCTGACCTTCTTGGCTGAGAAGGACACCAGCAT
Trypanoplasma.borreli           GACGTGTCCGTAGTCGACCTTACATTTACCACTACTAAAGATACAAGCAT

Leptomonas.lactosovorans.parti  CCAGGAGATCGACGCCGCCTTCAAGCGCGCGTCCAAGACGTACATGAAGG
Herpetomonas.pessoai            CAAGGAGATTGACGAGGCCTTCAAGCGCGCGTCCAAGACGTACATGAAGG
Herpetomonas.muscarum           CAAGGAGATCGACGCCGCCCTGAAGAAGGCCTCCAAGACGTACATGAAGG
Leptomonas.podlipaevi.5         CCAGGAGATCGACGCTGCCCTGAAGAAGGCGGCCAACACGTACATGAAGG
Leptomonas.seymouri             CCAGGAGATCGACGCGGCGCTGAAGAAGGCGTCCAAGACGTACATGAAGG
Leptomonas.pyrrhocoris          CCAGGAGATCGACGCTGCCCTGAAGAAGGCGTCCAAGACGTACATGAAGG
Leptomonas.peterhoffi           CCAGGAGATCGACGCCGCCCTGAAGAAGGCGTCCCAGACGTACATGAAGG
Wallaceina.brevicula            CCAGGAGATCGACGCCGCCCTGAAGAAGGCGTCCCAGACGTACATGAAGG
Blastocrithidia.gerricola       CCAAGAGATCGACGCCGCCCTGAAGAAGGCGTCCCAGACGTACATGAAGG
Leptomonas.sp.Cfm               CCAGGAGATCGACGCCGCCCTCAAGAAGGCGTCCCGCACGTACATGAAGG
Crithidia.fasciculata           CCAGGAGATCGACGCGGCCCTCAAGAAGGCGTCGCAGACCTACATGAAGG
Leishmania.mexicana             CCAGGAGATCGACAAGGCCATCAAGAAGGCGGCGCAGACGTACATGAAGG
Leishmania.tarentolae           CCAGGAGATCGACAAGGCCATCAAGAAGGCGGCGCAGACGTACATGAAGG
Leishmania.major.partial        --------------------------------------------------
Leptomonas.costaricensis        CCAGGAGATCGACGCGGCCATCAAGAAGGCGTCGCAGACGTACATGAAGG
Phytomonas.sp                   CAAGGAGATCGACGCCGCGCTGAAGAAGGCGGT---GACGTACATAAAGG
T.brucei                        CAAGGAGATCGACGCTGCCCTGAAGCGCGCCTCCAAGACATACATGAAGA
T.vivax.partial                 --------------------------------------------------
T.cruzi                         ACAGGAGATCGACGCCGCCCTGAAGCGCGCGTCTAAGACTTACATGAAAG
T.rangeli.partial               CAAAGAGATCGACGCCGCCCTGAAACGCGCGTCGAAGACGTACATGAAGG
Euglena.gracilis                CAAGGAGATCGACTCCCTGTTGAAGAAGGCCTCCCAGACATACCTCAAGG
Trypanoplasma.borreli           TAAAGAGATCGATGCCGCTCTGAAGCGTGCTGCTGCATCGTACCTCCGTG

Leptomonas.lactosovorans.parti  GCATCCTCAGCTACACGGACGAGGAGCTGGTGTCGTCCGACTTCTACAAC
Herpetomonas.pessoai            GCATCCTCAGCTACACCGACGAGGAGCTTGTGTCGTCGGACTTCTACAAC
Herpetomonas.muscarum           GCATCCTCAGCTACACCGACGAGGAGCTCGTGTCGACGGACTTTGTCAAC
Leptomonas.podlipaevi.5         GCATCCTCGGCTTCACGGACGAGGAGCTGGTGAGCGCCGACTTCATCAAC
Leptomonas.seymouri             GCATCCTCGGCTTCACGGACGAGGAGCTGGTGAGCGCCGACTTCATCAAC
Leptomonas.pyrrhocoris          GCATCCTCGGCTACACGGACGAGGAGCTGGTGAGCAGCGACTTCATCAAC
Leptomonas.peterhoffi           GCATCCTCGGCTACACCGACGAGGAGCTGGTGAGCACCGACTTCATCAAC
Wallaceina.brevicula            GCATCCTCGGCTACACCGACGAGGAGCTGGTGAGCACCGACTTCATCAAC
Blastocrithidia.gerricola       GCATCCTCGGCTACACCGACGAGGAGCTGGTGAGCACCGACTTCATCAAC
Leptomonas.sp.Cfm               GCATCCTCGGCTTCACCGACGACGAGTTGGTCAGCAGCGACTTCATCAAC
Crithidia.fasciculata           GCATCCTCGGCTTCACGGACGAGGAGCTGGTGAGCAGCGACTTCATCAAC
Leishmania.mexicana             GCATCCTCGGCTTCACCGATGAGGAGCTCGTCAGCGCCGACTTTATCAAC
Leishmania.tarentolae           GCATCCTCGGCTTCACCGATGAGGAGCTCGTCAGCGCCGACTTTATCAAC
Leishmania.major.partial        --------------------------------------------------
Leptomonas.costaricensis        GCATCCTCGGCTTCACTGAGGACGAGCTGGTGAGCGCCGACTTCATCAAC
Phytomonas.sp                   GCATCCTCAGCTTTACCGACGAGGAGTTGGTGAGCACAGACTTTATCAAC
T.brucei                        ACATTCTCGGTTACACCGATGAGGAGCTCGTCAGTGCCGACTTCATCAGC
T.vivax.partial                 --------------------------------------------------
T.cruzi                         GAATTCTCGGCTACACGGACGAGGAGCTTGTGAGTGCAGACTTCATTAAT
T.rangeli.partial               GCATCCTTGGCTTCACAAACGAGGAACTTGTGAGCACAGACTTTATCAAC
Euglena.gracilis                GAATCTTGGGCTTCACAGATGAGGAGCTCGTGTCGACGGACTTCGTGCAT
Trypanoplasma.borreli           GTATCCTGGACATCTCCAAAGAAGAGCTCGTCAGCACTGACTTTATCCAT

Leptomonas.lactosovorans.parti  AACAGCAACAGCTCCATCTACGACTCCAAGGCCACGCTGCAGAACAACCT
Herpetomonas.pessoai            AACAACAACAGCTCCATCTACGACTCCAAGGCGACGCTGCAGAACAACCT
Herpetomonas.muscarum           AACAACAACAGCTCCATCTACGACTCCAAGGCCACCCTGCAGAACAACCT
Leptomonas.podlipaevi.5         GACGCCCGCAGCTCGATCTACGACTCCAAGGCGACGCTGCAGAACAACCT
Leptomonas.seymouri             GACGCCCGCAGCTCGATCTACGACTCCAAGGCGACGCTGCAGAACAACCT
Leptomonas.pyrrhocoris          GACGCCCGCAGCTCGATCTACGACGCGAAGGCGACGCTGCAGAACAACCT
Leptomonas.peterhoffi           GACGCGCGCAGCTCCATCTACGACGCCAAGGCCACCCTGCAGAACAACCT
Wallaceina.brevicula            GACGCGCGCAGCTCCATGTACGACGCCAAGGCCACCCTGCAGAACAACCT
Blastocrithidia.gerricola       GACGCGCGCAGCTCCATCTACGACGCCAAGGCCACCCTGCAGAACAACCT
Leptomonas.sp.Cfm               GACGCCCGCAGCTCCATTTACGACTCCAAGGCCACCGTGCAGAACAACCT
Crithidia.fasciculata           GACGCGCGCAGCTCCATCTACGACTCCAAGGCGACGCTGCAGAACAACCT
Leishmania.mexicana             GACAACCGCAGCTCCGTCTACGACTCCAAGGCGACCCTGCAAAACAACCT
Leishmania.tarentolae           GACAACCGCAGCTCCGTCTACGACTCCAAGGCGACCCTGCAAAACAACCT
Leishmania.major.partial        --------------------------------------------------
Leptomonas.costaricensis        GACAACCGCAGCTCCATCTACGACTCGAAGGCGACGCTGCAGAACAACCT
Phytomonas.sp                   GACAACCACAGCTCCATCTACGACTCCAAGGCGACGCTCCAAAACAACCT
T.brucei                        GACAGCCGCAGCTCCATTTACGACTCCAAGGCGACCCTGCAGAACAACCT
T.vivax.partial                 --------------------------------------------------
T.cruzi                         GACAACCGCAGCTCCATTTACGACTCCAAGGCAACGCTGCAGAACAACCT
T.rangeli.partial               GACGACCGCAGCTCCATNTACGACTCCCTGGCGACGCTGCAAAACAATCT
Euglena.gracilis                GACAATCGTTCTTCTATCTACGATTCTTTGGCCACCCTCCAGAACAACTT
Trypanoplasma.borreli           AATCCGAACAGCTCCATCTATGACTCACTGGCCACACTACAGAACAACCT

Leptomonas.lactosovorans.parti  GCCCGGCGAGAAGCGCTTCTTCAAGGTCGTCTCGTGGTACGACAACGAGT
Herpetomonas.pessoai            GCCCGGCGAGAAGCGCTTCTTCAAGGTTGTGTCCTGGTACGACAACGAGT
Herpetomonas.muscarum           GCCCGGCGAGAAGCGCTTCTTCAAGGTCGTCTCCTGGTACGACAACGAGT
Leptomonas.podlipaevi.5         GCCCGGCGAGAAGCGCTTCTTCAAGGTCGTGTCGTGGTACGACAACGAGT
Leptomonas.seymouri             GCCCGGCGAGAAGCGCTTCTTCAAGGTCGTGTCGTGGTACGACAACGAGT
Leptomonas.pyrrhocoris          GCCCGGCGAGAAGCGCTTCTTCAAGATCGTGTCGTGGTACGACAACGAGT
Leptomonas.peterhoffi           GCCCGGCGAGAAGCGCTTCTTCAAGATCGTGTCGTGGTACGACAACGAGT
Wallaceina.brevicula            GCCCGGCGAGAAGCGCTTCTTCAAGATCGTGTCGTGGTACGACAACGAGT
Blastocrithidia.gerricola       GCCCGGCGAGAAGCGCTTCTTCAAGATCGTGTCGTGGTACGACAACGAGT
Leptomonas.sp.Cfm               CCCCGGCGAGAAGCGCTTCTTCAAGGTCGTCTCCTGGTACGACAACGAGT
Crithidia.fasciculata           GCCCGGCGAGAAGCGCTTCTTCAAGGTGGTGTCGTGGTACGACAACGAGT
Leishmania.mexicana             GCCTGGAGAGAAGCGCTTCTTCAAGGTCGTGTCTTGGTACGACAACGAGT
Leishmania.tarentolae           GCCTGGAGAGAAGCGCTTCTTCAAGGTCGTGTCTTGGTACGACAACGAGT
Leishmania.major.partial        --------------------------------------------------
Leptomonas.costaricensis        GCCCGGTGAGAAGCGCTTCTTCAAGATCGTATCGTGGTACGACAACGAGT
Phytomonas.sp                   GCCCAACGAGAAGCGCTTCTTCAAGCTCGTGTCCTGGTACGATAACGAAT
T.brucei                        CCCCAACGAACGTCGCTTCTTCAAGATTGTCTCGTGGTACGATAACGAGT
T.vivax.partial                 --------------------------------------------------
T.cruzi                         GCCGAAGGAGCGCCGCTTCTTCAAGATTGTGTCGTGGTACGACAACGAGT
T.rangeli.partial               GCCTAACGAGCGTCGCTTCTTCAAGGTTGTGTCGTGGTATGACAACGAGT
Euglena.gracilis                GCCTGGGGAGAAGAGGTTGTTCAAGGTGGTGTCCTGGTATGACAACGAGT
Trypanoplasma.borreli           GCCTACAGAGAAGCGCTTCTTCAAGGTTGTTTCGTGGTATGATAACGAGT

Leptomonas.lactosovorans.parti  GGGGCTACTCGCACCGCGTGGTGGACCT----------------------
Herpetomonas.pessoai            GGGGCTACTCTCACCGTGTCGTGAACCTGCTGTCCTTCATGATCAAGAAG
Herpetomonas.muscarum           GGGGCTACTCCCACCGTGTCGTCAACCTGCTGGGCTTCATGATCAAGAAG
Leptomonas.podlipaevi.5         GGGGCTACTCCCACCGCGTGGTGGACCTGGTGCGCTTCATGGGCGCCAAG
Leptomonas.seymouri             GGGGCTACTCCCACCGCGTGGTGGACCTGGTGCGCTTCATGGGCGCCAAG
Leptomonas.pyrrhocoris          GGGGCTACTCCCACCGCGTGGTGGACCTGGTGCGCTACATGGGCGCCAAG
Leptomonas.peterhoffi           GGGGCTACTCCCACCGCGTGGTGGACCTTGTGCGCTTCATGGGCGCCAAG
Wallaceina.brevicula            GGGGCTACTCCCACCGCGTGGTGGACCTTGTGCGCTTCATGGGCGCCAAG
Blastocrithidia.gerricola       GGGGCTACTCCCACCGCGTGGTGGACCTTGTGCGCTTCATGGGCGCCAAG
Leptomonas.sp.Cfm               GGGGTTACTCCCACCGCGTGGTCGACCTGGTGCGCTTCATGGGTGCCAAG
Crithidia.fasciculata           GGGGCTACTCGCACCGCGTGGTGGACCTTGTGCGCTTCATGGGCGCCAAG
Leishmania.mexicana             GGGCCTACTCGCACCGCGTGGTGGACCTGGTGCGCTACATGGCCGCCAAG
Leishmania.tarentolae           GGGCCTACTCGCACCGCGTGGTGGACCTGGTGCGCTACATGGCCGCCAAG
Leishmania.major.partial        --------------------------------------------------
Leptomonas.costaricensis        GGGGCTACTCGCACCGCGTGGTGGACCTGGTCCGCTACATGGCTGCCAAG
Phytomonas.sp                   GGGGCTACTCCCACCGTGTTGTGGATCTAATTATCTACATGGCTAAGAGG
T.brucei                        GGGGTTATTCCCACCGTGTGGTGGATCTTGTCCGCCACATGGCCGCTCGG
T.vivax.partial                 --------------------------------------------------
T.cruzi                         GGGGATACTCCCACCGCGTGGTGGACCTTGTACGCCACATGGCCTCGAAG
T.rangeli.partial               GGGGATACTCCCACCGCGTGGTGGACCT----------------------
Euglena.gracilis                GGGGATACTCCAACCGTGTCGTCGACCTGCTGAAGCACATGTCTGGAAAC
Trypanoplasma.borreli           GGGGATACTCCAATCGCGTGGTAGACCTCGTACGCTTTATGAATTCCAAA
;
end;

[!
Likelihood settings from best-fit model (GTR+I+G) selected by AIC in Modeltest Version 3.06
]

BEGIN PAUP;
Lset  Base=(0.2173 0.3033 0.2768)  Nst=6  Rmat=(0.9261 1.9315 1.1241 2.4346 4.9447)  Rates=gamma  Shape=0.7971  Pinvar=0.2625;
END;